Devices – SnyderLab Next-Generation Sequencing

Michael

November 20, 2020

Antibodies, Assay Kits, Biology Cells, cDNA, Clia Kits, Culture Cells, Devices, DNA, Exosomes, Gels, Medium & Serums, NATtrol, Panel, Particles, Pcr Kits Peptides, Reagents

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Comparison of Burrows-Wheeler Transform-Based Mapping Algorithms Used in High-Throughput Whole-Genome Sequencing: Application to Illumina Data for Livestock Genomes.

Ongoing developments and price decreases in next-generation sequencing (NGS) applied sciences have led to a rise of their software, which has drastically enhanced the fields of genetics and genomics. Mapping sequence reads onto a reference genome is a elementary step within the evaluation of NGS information. Environment friendly alignment of the reads onto the reference genome with […]

Michael

November 20, 2020

Antibodies, Assay Kits, Biology Cells, Clia Kits, Culture Cells, Devices, DNA, DNA Templates, DNA Testing, Enzymes, Equipments, Exosomes, Gels, Medium & Serums, NATtrol, Panel, PCR, Pcr Kits Peptides, Reagents

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Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.

Large information produced because of the introduction of next-generation sequencing (NGS) know-how is extensively used for organic researches and medical prognosis. The essential step in NGS evaluation is learn alignment or mapping which is computationally intensive and complicated. The mapping bias tends to have an effect on the downstream evaluation, together with detection of polymorphisms. So as to present […]

Michael

November 20, 2020

Antibodies, Assay Kits, cDNA, Clia Kits, Culture Cells, Devices, DNA, DNA Templates, DNA Testing, Elisa Kits, Enzymes, Equipments, Exosomes, Gels, Isotypes, Panel, Pcr Kits Peptides, Reagents, Recombinant Proteins

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Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.

We current our work on {hardware} accelerated genomics pipelines, utilizing both FPGAs or GPUs to speed up execution of BWA-MEM, a widely-used algorithm for genomic brief learn mapping. The mapping stage can take as much as 40% of total processing time for genomics pipelines. Our implementation offloads the Seed Extension perform, one of many predominant BWA-MEM computational features, onto an […]