Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos.

Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos.

The temperate bamboos (tribe Arundinarieae, Poaceae) are strongly supported as monophyly in latest molecular research, however taxonomic delineation and phylogenetic relationships inside the tribe lack decision. Right here, we sampled 39 species (36 temperate bamboos and three outgroups) for restriction-site related DNA sequencing (RAD-seq) with an emphasis on Phyllostachys clade and associated clades. Utilizing the […]

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Hobbes: optimized gram-based methods for efficient read alignment.

Hobbes: optimized gram-based methods for efficient read alignment.

Latest advances in sequencing know-how have enabled the fast technology of billions of bases at comparatively low value. A vital first step in lots of sequencing functions is to map these reads to a reference genome. Nonetheless, when the reference genome is massive, discovering correct mappings poses a major computational problem because of the sheer quantity of […]

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Comparison of Burrows-Wheeler Transform-Based Mapping Algorithms Used in High-Throughput Whole-Genome Sequencing: Application to Illumina Data for Livestock Genomes.

Comparison of Burrows-Wheeler Transform-Based Mapping Algorithms Used in High-Throughput Whole-Genome Sequencing: Application to Illumina Data for Livestock Genomes.

Ongoing developments and price decreases in next-generation sequencing (NGS) applied sciences have led to a rise of their software, which has drastically enhanced the fields of genetics and genomics. Mapping sequence reads onto a reference genome is a elementary step within the evaluation of NGS information. Environment friendly alignment of the reads onto the reference genome with […]

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