The temperate bamboos (tribe Arundinarieae, Poaceae) are strongly supported as monophyly in latest molecular research, however taxonomic delineation and phylogenetic relationships inside the tribe lack decision. Right here, we sampled 39 species (36 temperate bamboos and three outgroups) for restriction-site related DNA sequencing (RAD-seq) with an emphasis on Phyllostachys clade and associated clades. Utilizing the […]
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To check the newly decided sequences in opposition to the topic sequences saved within the databases is a vital job within the bioinformatics. Thankfully, latest survey studies that the state-of-the-art aligners are already quick sufficient to deal with the extremely quantity of quick sequence reads within the cheap time. Nonetheless, for aligning the lengthy sequence […]
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We current our work on {hardware} accelerated genomics pipelines, utilizing both FPGAs or GPUs to speed up execution of BWA-MEM, a widely-used algorithm for genomic brief learn mapping. The mapping stage can take as much as 40% of total processing time for genomics pipelines. Our implementation offloads the Seed Extension perform, one of many predominant BWA-MEM computational features, onto an […]
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