Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos.

Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos.

The temperate bamboos (tribe Arundinarieae, Poaceae) are strongly supported as monophyly in latest molecular research, however taxonomic delineation and phylogenetic relationships inside the tribe lack decision. Right here, we sampled 39 species (36 temperate bamboos and three outgroups) for restriction-site related DNA sequencing (RAD-seq) with an emphasis on Phyllostachys clade and associated clades. Utilizing the […]

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Comparison of Burrows-Wheeler Transform-Based Mapping Algorithms Used in High-Throughput Whole-Genome Sequencing: Application to Illumina Data for Livestock Genomes.

Comparison of Burrows-Wheeler Transform-Based Mapping Algorithms Used in High-Throughput Whole-Genome Sequencing: Application to Illumina Data for Livestock Genomes.

Ongoing developments and price decreases in next-generation sequencing (NGS) applied sciences have led to a rise of their software, which has drastically enhanced the fields of genetics and genomics. Mapping sequence reads onto a reference genome is a elementary step within the evaluation of NGS information. Environment friendly alignment of the reads onto the reference genome with […]

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Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.

Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.

We current our work on {hardware} accelerated genomics pipelines, utilizing both FPGAs or GPUs to speed up execution of BWA-MEM, a widely-used algorithm for genomic brief learn mapping. The mapping stage can take as much as 40% of total processing time for genomics pipelines. Our implementation offloads the Seed Extension perform, one of many predominant BWA-MEM computational features, onto an […]

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